Talk:DEC Berlin Meeting 2017
Contact Details
Dr Mark Hill
Head of Embryology, School of Medical Sciences Room 221, level 2, Wallace Wurth West UNSW AUSTRALIA UNSW SYDNEY NSW 2052 AUSTRALIA T: +61 (2) 9385 2477 F: +61 (2) 9385 2866 E: m.hill@unsw.edu.au W: medicalsciences.med.unsw.edu.au
Prof Beate Brand-Saberi
Abteilung für Anatomie und Molekulare Embryologie Institut für Anatomie Ruhr-Universität Bochum Universitätsstraße 150 MA 5 Süd/161 44801 Bochum Tel: 0234/3224556
Prof Rosa Mirapeix
Anatomy and Embryology Unit Morphological Science Department Universitat Autònoma de Barcelona email: rosa.mirapeix@uab.cat
Prof Wouter H Lamers
Tytgat Institute for Liver and Intestinal Research Academic Medical Center, University of Amsterdam Meibergdreef 69-71, 1105 BK Amsterdam, The Netherlands T: +31205665948 (secr) F: +31205669190
Prof Shigehito Yamada
Congenital Anomaly Research Center, Kyoto University Graduate School of Medicine, Kyoto, Japan. E-mail: shyamada@cac.med.kyoto-u.ac.jp (office) shyamada@mac.com (home) Phone (+81) 75-753-4345 Fax (+81) 75-753-4621
Dr Thorsten Heupel
Product Manager Technology Center Software & Digital Solutions Microscopy Business Group
Carl Zeiss Microscopy GmbH ZEISS Group Kistlerhofstr. 75 81379 München, Germany
Phone: +49 89 90 9000-881 Mobile: +49 171 2246860 Fax: +49 89 90 9000-820 thorsten.heupel@zeiss.com www.zeiss.com
Dr. Peter Giere
Head, Centre of Collections Curator of the Embryological Collection Museum für Naturkunde Leibniz Institute for Evolution and Biodiversity Science
phone: +49-(0)30-2093-8703 fax: +49-(0)30-2093-8868 e-mail: peter.giere(at)mfn-berlin.de Postal Address: Museum für Naturkunde Berlin Leibniz Institute for Evolution and Biodiversity Science Dr. Peter Giere Invalidenstr. 43 10115 Berlin Germany Sprecher der AG Kuratoren der Gesellschaft für Biologische Systematik (GfBS) Speaker of the Curators' Group within the Society of Biological Systematics (GfBS, Germany)
Dr Steven Lisgo
HDBR Resource Manager
Email: steven.lisgo@ncl.ac.uk Telephone: +44 (0) 191 241 8646 Fax: +44 (0) 191 241 8666 Address: Institute of Genetic Medicine Newcastle University International Centre for Life Central Parkway Newcastle upon Tyne NE1 3BZ
Bernhard Schurian
Museum für Naturkunde
Email: bernhard.schurian@mfn-berlin.de Tel: +49 (0)30 2093 - 8422 Fax: +49 (0)30 2093 - 8868
Leibniz-Institut für Evolutions- und Biodiversitätsforschung Invalidenstraße 43 10115 Berlin Deutschland
Elizabeth Lockett
National Museum of Health and Medicine
Links
Introduction
2. DEC Beginnings
2013
Research and Presentations | |
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File:Hill Viebahn Blechschmidt Collection.jpg | File:Giere Hill - Hill Collection.jpg |
Goettingen Anatomy and Embryology Seminar | Museum of Natural History Embryology Seminar |
2014
Establish the DEC.
Kyoto Collection Research | |
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<html5media height="600" width="450">File:Stage20 MRI S05.mp4</html5media> | <html5media height="600" width="400">File:Stage20 MRI S02.mp4</html5media> |
File:Kohei Shiota-Mark Hill-Shigehito Yamada-Mineo Yasuda.jpg
Prof. Kohei Shiota, Dr Mark Hill, Prof. Shigehito Yamada and Prof. Mineo Yasuda |
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2015
Planned with partners the digitization project.
Presentations | |
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Kyoto (Nov 2015) | Washington (Dec 2015) |
File:Kyoto2015symposium40 slide02.jpg | File:Washinton2015seminar slide01.jpg |
Purchased slide scanner | |
Zeiss Axioscan.Z1 | UNSW Foundation donation plaque |
Blechschmidt Collection scanning commences.
2016
Slide Scanning | |
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File:Mark and Embryo.jpg | |
Blechschmidt Collection slide scanning completed. |
New collections join DEC | |
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File:Hill Mirapeix Domenech-Mateu Collection.jpg
Prof. Rosa Mirapeix |
Domenech-Mateu Collection – Universitat Autònoma de Barcelona.
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Image Server | |
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Testing of online server The Open Microscopy Environment OME Help Using OMERO.web
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Summary
Between 2013 to 2016 following presentations, collection visits, and research the consortium was established.
Summary - DEC Beginnings |
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Slide Scanner
A key to the project was to evaluate the slide scanning options.
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Online Database Software
A well supported and freely available software was required for this large image database. |
3. DEC Current
2017
Slide Scanning | |
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Hinrichsen Collection commences (1200 slides scanned to date) | |
Prof. Beate Brand-Saberi |
File:ME54 001.jpg
ME 54 Carnegie stage 21, CRL 22.5 mm |
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Summary
2017 completed first collection scanning and testing of the updated online database software.
Summary - DEC Current |
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Scanned Slide Files
This means there are always at least 3 separate copies of the original data in 3 different locations. |
Online Database
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4. DEC Online
Below is a link to the Online Image database - a single section on a slide from the Blechschmidt collection.
Online Image Database - Access |
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Please note that only registered users who have agreed to the DEC usage conditions can access the database images.
Therefore for non-registered viewers, the links below will show only a link to the OMERO log-in page. |
File:Embryo-1951-09-01-Slide-60.jpg |
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The images below are screenshots from the DEC online database.
Template:Embryo1951-09-01-Slide60 gallery