Talk:UAB-DMC 2019 Slide Scanning: Difference between revisions
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==Basic Scanner Setup== | ==Basic Scanner Setup== | ||
This assumes that the scanner is initially empty of all slides. | This assumes that the scanner is turned off and initially empty of all slides. | ||
==Turning On== | ==Turning On== | ||
Line 13: | Line 13: | ||
==Common Errors== | ==Common Errors== | ||
* '''Do not hit | * '''Keyboard Spacebar''' - Do not hit while any process running as this will immediately stop any Scanning process. | ||
* | * '''Preview Scan''' - Red light on Tray, means error loading tray. | ||
** Open door, open error tray and check that rack is loaded correctly with no material on slide | ** Open door, open error tray and check that rack is loaded correctly with no material on slide holder. | ||
** Replace rack, close door, re-run '''Preview Scan'''. See if error (red light) is replaced by OK (green). | ** Replace rack, close door, re-run '''Preview Scan'''. See if error (red light) is replaced by OK (green). | ||
==Embryos== | |||
{{Domenech-Mateu Collection Embryos table1}} |
Latest revision as of 22:32, 13 September 2019
Basic Scanner Setup
This assumes that the scanner is turned off and initially empty of all slides.
Turning On
1. Turn on Computer | 2. Turn on Scanner |
Common Errors
- Keyboard Spacebar - Do not hit while any process running as this will immediately stop any Scanning process.
- Preview Scan - Red light on Tray, means error loading tray.
- Open door, open error tray and check that rack is loaded correctly with no material on slide holder.
- Replace rack, close door, re-run Preview Scan. See if error (red light) is replaced by OK (green).
Embryos
Page | Box No | Reference | Carnegie Stage | Crown-Rump Length | Age | Section | Thickness | Stain | Part of the body | (No color) | Histology | No total de portes | No sections | Tesis | Problems | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
New | Old | (mm) | (days) | Transverse | (μm) | (HE/T/A/AT/V/B) | (V-green/N-orange/R-red) | (Y/N) | ||||||||
1 | 1 | E1 | PLA-015 | 10 | 3.0 | 22 | T | 10 | HE | Tot | 1 | R | 2 | 172 | Si | FOTO. 7 pares de somitos. Porta 1 roto. |
1 | 1 | E2 | Ri-5 | 11 | 3.5 | 26 | T/O | 10 | HE | Tot | 1 | V | 4 | 284 | Si | FOTO. Mal tallat. Corazon muy interesante. |
1 | 1 | E3 | MAR | 12 | 4.0 | 26 | T | 10 | HE | Tot | 1 | R | 4 | 272 | Si | Seno venoso en el corazon |
1 | 1 | E4 | MAR-1 | 12 | 4.0 | 26 | T | 10 | HE | Tot | 1 | N | 4 | 222 | ||
1 | 1 | E5 | MAR-5 | 12 | 4.0 | 26 | T | 10 | HE | Tot | 1 | N | 5 | 272 | ||
2 | E6 | SS-19 | 14 | 5.0 | 32 | T | 10 | HE | Tot | 1 | R | 7 | 364 | |||
2 | E7 | HM-3 | 13 | 5.5 | 32 | T | 10 | HE | Tot | 2 | R-V | 9 | 448 | Mal cabeza y abdomen. Resto bien | ||
3 | 3 | E8 | Pu-5 | 13 | 6.0 | 28 | T | 10 | HE | Tot | 1 | N | 10 | 427 | Porta 1 roto. Ectopia cordis? | |
3 | 3 | E9 | Ri-1 | 13 | 6.0 | 28 | T | 10 | HE | Tot | 1 | N | 8 | 505 | Si | FOTO. Corazon muy bueno. Cavidades y cono truncos |
3 | 3 | E10 | SS-01 | 13 | 6.0 | 28 | T | 10 | HE | Tot | 1 | R | 7 | 410 | Si | |
3 | 3 | E11 | Bi-4 | 14 | 6.8 | 32 | T | 10 | HE | Tot | 1 | R | 8 | 420 | ||
5 | 4 | E12 | Do-03 | 15 | 8.0 | 36 | T | 10 | HE | Tot | 3 | V-N-R | 12 | 513 | "V: a partir # 4 R: # 8 N: #12" | |
5 | 4 | E13 | ES | 15 | 8.0 | 33 | T | 10 | HE | Tot | 1 | N | 6 | 346 | ||
5 | 4 | E14 | FRA | 15 | 8.0 | 36 | T | 8 | HE | Tot | 1 | V | 29 | 950 | Si | Molt destenyit |
5 | 4 | E15 | PLA-014 | 15 | 8.0 | 33 | T | 10 | HE | Tot | 1 | N | 5 | 496 | Si | |
9 | 5 | E16 | FRA-01 | 15 | 8.1 | 33 | T | 8 | HE | Tot | 1 | N | 14 | 1112 | Molt destenyit | |
9 | 5 | E17 | Du | 15 | 8.4 | 33 | T | 8 | HE | Tot | 2 | N-R | 40 | 845 | Si | |
9 | 5 | E18 | MAR-2 | 15 | 8.5 | 33 | T | 10 | HE | Tot | 1 | N | 11 | 525 | Gran dilatac. vescicula encef. D. /ventricle procencefalico | |
13 | 6 | E19 | CB | 15 | 9.0 | 37 | T | 10 | HE | Tot | 1 | V | 10 | 502 | ||
13 | 6 | E20 | PG | 15 | 9.0 | 36 | F | 10 | HE | Tot | 1 | R | 12 | 486 | ||
13 | 6 | E21 | PG-6 | 15 | 9.0 | 33 | T | 10 | HE | Tot | 1 | R | 15 | 491 | Cabeza mal. Parcialmente desteñido | |
16 | 7 | E22 | Ar | 16 | 10.0 | 37 | T/O | 10 | HE | Tot | 2 | V-N | 12 | 622 | Fisura palatina. Porta # 7-N | |
16 | 7 | E23 | Bi-2 | 16 | 10.0 | 37 | T | 10 | HE | Tot | 1 | N | 11 | 487 | Muy desteñido | |
16 | 7 | E24 | Bi-6 | 16 | 10.0 | 37 | T | 10 | HE | Tot | 1 | N | 8 | 427 | si | Porta 3 roto. |
16 | 7 | E25 | DF-1 | 16 | 10.0 | 37 | F | 10 | HE | Tot | 1 | V | 11 | 502 | Si | Porta 7 trencat. Muy bueno |
16 | 7 | E26 | Du-10 | 16 | 10.0 | 37 | T | 10 | HE | Tot | 1 | N | 23 | 655 | Si | Porta 18 roto. Algo desteñido |
16 | 7 | E27 | Po | 16 | 10.0 | 37 | T/F | 7 | HE | Tot | 1 | N | 22 | 1107 | Si | En tesis talls F. Molt destenyit |
23 | 8 | E28 | Du-05 | 16 | 10.3 | 37 | T | 8 | HE | Tot | 1 | N | 34 | 798 | Si | 8 portes trencats i mal estat. |
23 | 8 | E29 | MAR-3 | 16 | 10.3 | 37 | T | 10 | HE | Tot | 1 | V | 11 | 619 | Si | |
23 | 8 | E30 | Ri-3 | 16 | 10.3 | 37 | T | 10 | HE | Tot | 1 | V | 13 | 747 | Raquisquisis total. Rodetes neurales bien desarrollados | |
23 | 8 | E31 | Fu-41 | 16 | 10.8 | 37 | T | 10 | HE | Heart | 1 | V | 3 | 208 | ||
28 | 9 | E32 | PG-3 | 17 | 11.0 | 41 | T | 10 | HE | Tot | 1 | R | 11 | 524 | Amputacion de estremidad superior derecha. Desteñido | |
28 | 9 | E33 | Fu-22 | 17 | 11.5 | 41 | F | 10 | HE | Tot | 1 | N | 10 | 416 | Si | En tesis posa F pero jo crec que és T |
28 | 9 | E34 | PG-1 | 17 | 11.5 | 39 | T | 10 | HE | Tot | 1 | R | 19 | 560 | ||
31 | 10 | E35 | Bi-3 | 17 | 12.0 | 41 | T | 10 | HE | Tot | 1 | R | 14 | 578 | ||
31 | 10 | E36 | Bi-7 | 18 | 12.0 | 42 | T | 10 | HE | Tot | 2 | V-R | 8 | 473 | Si | portas 7 i 8 R |
31 | 10 | E37 | CB-3 | 17 | 12.0 | 40 | F | 10 | HE | Tot | 1 | R | 12 | 434 | ||
31 | 10 | E38 | Gi-07 | 17 | 12.0 | 41 | T | 10 | B | Tot | 1 | R | 13 | 625 | Si | Espina bifida y rumplessnes |
35 | 11 | E39 | Du-11 | 17 | 12.5 | 41 | T | 10 | HE | Tot | 1 | V | 35 | 901 | Si | "A partir porta 3-V # 20-N. No existe porta 1" |
37 | 12 | E40 | Gi-01 | 17 | 13.0 | 41 | T | 10 | HE | Tot | 1 | V | 13 | 580 | Si | |
38 | 13 | E41 | CB-8 | 17 | 14.0 | 44 | T | 10 | HE | Tot | 2 | V-N | 39 | 661 | Lesion vescicula primaria | |
38 | 13 | E42 | Fu-19 | 17 | 14.0 | 44 | T | 10 | HE | Tot | 1 | V | 27 | 831 | Malformacion oro-facial. Ectopia cordis. Hypertelorismo | |
42 | 14 | E43 | Du-09 | 18 | 15.0 | 44 | T | 10 | B | Tot | 1 | R | 46 | 1837 | Si | "Porta 45 19 roto. Falta porta 41" |
42 | 14 | E44 | FRA-26 | 17 | 15.0 | 43 | T | 10 | HE | Tot | 1 | N | 18 | 796 | ||
42 | 14 | E45 | FRA-30 | 18 | 15.0 | 44 | T | 10 | HE | Tot | 1 | V | 11 | 701 | ||
46 | 15 | E46 | Fu-43 | 18 | 15.0 | 44 | T | 10 | HE | Tot | 1 | R | 23 | 915 | Malformacion extremidades. Algo desteñido | |
46 | 15 | E47 | RE-1 | 18 | 15.0 | 43 | T | 10 | HE | Tot | 1 | V | 20 | 849 | "Portas 13 18 rotos pero reparados." | |
46 | 15 | E48 | SS-30 | 18 | 15.0 | 43 | T | 10 | HE | Tot | 1 | N | 29 | 900 | ||
50 | 16 | E49 | AG | 18 | 15.5 | 44 | T | 10 | HE | Tot | 2 | V-N | 38 | 926 | porta 15 V | |
50 | 16 | E50 | Ri-4 | 18 | 15.5 | 44 | T | 10 | HE | Tot | 1 | V | 30 | 1085 | FOTO. Labio leporino izq. Implantacion baja oreja. Sin color | |
54 | 17 | E51 | Fu-17 | 18 | 16.0 | 44 | T | 10 | HE | Tot | 1 | V | 32 | 954 | ||
54 | 17 | E52 | Fu-20 | 18 | 16.0 | 44 | T | 10 | HE | Tot | 2 | V-R | 20 | 788 | Si | Porta 2 roto. Portas 1i 2 R porta 3V |
54 | 17 | E53 | Fu-21 | 18 | 16.0 | 44 | T | 10 | HE | Tot | 1 | N | 24 | 850 | ||
58 | 18 | E54 | SS-21 | 18 | 16.0 | 44 | T | 10 | HE | Tot | 1 | N | 32 | 1053 | ||
58 | 18 | E55 | Fu-10 | 18 | 16.5 | 45 | F | 10 | HE | Tot | 1 | V | 18 | 596 | Si | FOTO |
61 | 19 | E56 | Bi-5 | 19 | 17.0 | 48 | T | 10 | HE | Tot | 1 | N | 20 | 881 | Si | |
61 | 19 | E57 | CB-7 | 19 | 17.0 | 45 | T | 10 | HE | Tot | 1 | V | 25 | 969 | ||
61 | 19 | E58 | Fu-40 | 19 | 17.0 | 48 | T | 10 | HE | Tot | 1 | N | 40 | 944 | Si | |
66 | 20 | E59 | HM-1 | 18 | 17.0 | 44 | T | 10 | HE | Tot | 2 | V-N | 23 | 861 | ||
66 | 20 | E60 | HM-2 | 18 | 17.0 | 44 | T | 10 | HE | Tot | 2 | V-N | 14 | 795 | ||
68 | 21 | E61 | SS-25 | 19 | 17.0 | 45 | T | 10 | HE | Tot | 1 | N | 37 | 937 | Porta 6 desteñido. | |
70 | 22 | E62 | Du-08 | 20 | 18.0 | 45 | T | 10 | B | Tot | 1 | N | 31 | 1112 | Si | Porta 1 roto. |
74 | 23 | E63 | FRA-12 | 19 | 18.0 | 45 | T | 10 | HE | Tot | 1 | R | 15 | 710 | Si | |
74 | 23 | E64 | GC | 19 | 18.0 | 45 | T | 10 | HE | Tot | 1 | V | 32 | 1038 | Si | |
74 | 23 | E65 | PG-2 | 20 | 18.0 | 45 | T | 10 | HE | Tot | 1 | R | 32 | 958 | ||
78 | 24 | E66 | PLA-010 | 19 | 18.0 | 45 | T | 10 | HE | Tot | 1 | R | 26 | 919 | Placas manias y pedias con radios. Malformac.encefalica | |
80 | 25 | E67 | Gi-10 | 20 | 19.0 | 51 | F | 10 | HE | Tot | 1 | N | 36 | 693 | Si | Preparacions grogues |
80 | 25 | E68 | Pu-3 | 20 | 19.0 | 51 | T | 10 | HE | Tot | 1 | V | 39 | 1080 | Si | FOTO. Transposició grans vasos/Ligera comunic. en infundibulo der |
84 | 26 | E69 | Ri-2 | 20 | 19.0 | 51 | T | 10 | HE | Tot | 2 | V-N | 23 | 867 | Si | Porta 9 cubre roto. |
84 | 26 | E70 | Ri-6 | 19 | 19.0 | 46 | T | 10 | HE | Tot | 1 | N | 30 | 976 | Si | Head-N + Body-V (a partir # 5) |
87 | 27 | E71 | SS-02 | 20 | 19.0 | 46 | T | 10 | HE | Tot | 1 | N | 23 | 794 | Si | |
87 | 27 | E72 | SS-18 | 19 | 19.0 | 46 | T | 10 | HE | Tot | 3 | N-V-R | 34 | 1036 | "Portas 5 y 10 sin muestra falta porta 23." | |
87 | 27 | E73 | SS-22 | 19 | 19.0 | 46 | F | 10 | HE | Tot | 1 | R | 12 | 471 | porta 8 R. | |
90 | 28 | E74 | DX | 20 | 20.0 | 51 | T | 10 | HE | Tot | 2 | V-N | 46 | 1143 | Portes 1 a 3- N; A partir de porta 3-V | |
92 | 29 | E75 | MAR-4 | 20 | 20.0 | 47 | T | 10 | HE | Tot | 1 | N | 36 | 1035 | ||
92 | 29 | E76 | VAL-1 | 20 | 20.0 | 51 | T | 10 | HE/TA | Body | 2 | N-R | 47 | 1254 | Si | "#2-R Falta#17. Més gran de 20mm? Sembla TA pero pot ser HE contaminada. En el documento pone que hay 47 portas, en caja hay 46, por tanto el conteo de cortes sale ligeramente distinto. El porta 17 está ligeramente fracturado." |
96 | 30 | E77 | Do-024 | 20 | 21.0 | 48 | T | 10 | HE | 1 | N | 41 | 1120 | |||
96 | 30 | E78 | DS-1 | 20 | 21.0 | 51 | T | 10 | HE | 1 | V | 25 | 955 | Si | Tuba i m. periestafilins | |
100 | 31 | E79 | PLA-003 | 20 | 21.0 | 51 | T | 10 | HE | 1 | V | 45 | 1211 | Si | ||
100 | 31 | E80 | VIC | 20 | 21.0 | 51 | 10 | HE | Tot | 1 | R | 27 | 842 | |||
104 | 32 | E81 | DF-5 | 20 | 22.0 | 50.5 | T | 10 | HE | 1 | N | 76 | 1424 | Si | Portes 1-8 mal estat. Sindrome de Vacterl. Atrecia esofagica. Porta 55 fracturado. | |
108 | 33 | E82 | Fu-08 | 20 | 22.0 | 49 | S | 10 | HE | 37 | 492 | Excencefalia mesencefalica. Fisura labio superior. Implantacion baja pabellon auricular. Perdida parte caudal embrion, Hay que invertirles el orden a este y al siguiente | ||||
108 | 33 | E83 | Fu-18 | 20 | 22.0 | 52 | T | 10 | HE | Tot | 1 | N | 36 | 987 | Si | 69-V. Falta el nº 23 |
112 | 34 | E84 | Gi-03 | 20 | 22.0 | 49 | F | 10 | HE | 1 | V | 48 | 1058 | Si | En tesis F ja crec T | |
114 | 35 | E85 | SS-29 | 21 | 22.0 | 54 | F | 10 | HE | 2 | V-N | 37 | 756 | "792-V 18-N. desgarro en region frontal " | ||
1 14 | 35 | E86 | VIC-1 | 21 | 22.0 | 49 | 10 | HE | 1 | N | 40 | 1425 | ciclope | |||
118 | 36 | E87 | Gi-04 | 21 | 23.0 | 50 | T | 10 | HE/TM | 1 | V | 56 | 1212 | Si | Ciclope | |
121 | 37 | E88 | He-1 | 21 | 23.0 | 50 | T | 10 | HE | 1 | N | 42 | 1177 | Si | ||
121 | 37 | E89 | He-9 | 21 | 23.0 | 50 | T | 10 | HE | 1 | N | 37 | 1043 | Si | Medicion dificil. Muy interesante el corazon | |
125 | 38 | E90 | Ri-8 | 21 | 23.0 | 50 | T | 10 | HE | 1 | V | 40 | 1155 | Si | ||
127 | 39 | E91 | FRA-25 | 21 | 24.0 | 52 | T | 10 | B | Cabeza | 1 | V | 16 | 599 | Si | En tesis T jocrec F. De porta 1 al 16. Cambiarlos de orden |
127 | 39 | E91 | FRA-25 Bis | 21 | 24.0 | 52 | T | 10 | HE | Cuerpo | 1 | V | 22 | 596 | Del porta 17 al 38. | |
129 | 40 | E92 | Fu-11 | 21 | 24.0 | 54 | T | 10 | HE | 1 | V | 50 | 1549 | Si | ||
132 | 41 | E93 | Fu-12 | 21 | 24.0 | 54 | F | 10 | HE | 1 | V | 40 | 1059 | Si | "Porta 1 trencat. Porta 11-17 corazón, porta 32-49 hígado." | |
134 | 42 | E94 | FRA-16 | 22 | 25.0 | 54 | T | 10 | HE/TA/VOF | Tot | 1 | V | 57 | 1635 | Si | "Espina bifida. Arrinencefalia. Palatosquisis. 57 portas en el documento en caja 56. " |
137 | 43 | E95 | Fu-02 | 22 | 25.0 | 54 | T | 10 | HE | 1 | V | 78 | 1234 | Falta el 37 (no aparece) | ||
1 41 | 44 | E96 | Fu-14 | 22 | 25.0 | 54 | T | 10 | HE | 1 | V | 47 | 1466 | Si | Lesion a nivell de cabeza. Corte a nivell cuello | |
141 | 44 | E97 | Fu-42 | 22 | 25.0 | 51 | T | 10 | HE | 1 | V | 52 | 1069 | falta la 17. bueno para UG y DIG. Anencefalia | ||
146 | 45 | E98 | Gi-02 | 22 | 25.0 | 54 | T | 10 | HE/TA | 2 | V-N | 50 | 1300 | Si | ||
1 49 | 46 | E99 | DF-4 | 22 | 26.0 | 54 | T/F | 10 | B | Head | 1 | V | 50 | 1112 | Si | FOTO. 10 R/ 5 N. Corte cabeza F. Cuerpo T |
152 | 47 | E100 | DF-2 | 23 | 27.0 | 57 | T | 10 | B | Tot | 1 | V | 65 | 1647 | Si | "Roto: 3l 32 56. Especial: 49 56 60" |
155 | 48 | E101 | Fu-13 | 23 | 27.5 | 57 | T | 10 | HE | 1 | V | 75 | 1597 | Si | ||
159 | 49 | E102 | PLA-009 | 23 | 27.5 | 57 | T | 10 | B | 1 | V | 51 | 1444 | Si | Muy bueno | |
50 | E103 | Fu-06 | 23 | 28.0 | 57 | T | 10 | HE | 1 | V | 99 | 1214 | Si | 92 roto. Molts portes aire | ||
167 | 51 | E103 | Fu-06 | 23 | 28.0 | 57 | T | 10 | HE | 1 | V | 51 | 1450 | |||
169 | 52 | E104 | GT | 23 | 28.0 | 57 | T | 10 | HE | 1 | V | 100 | 1379 | |||
174 | 53 | E104 | GT | 23 | 28.0 | 57 | T | 10 | HE | 1 | V | 15 | 268 | |||
175 | 54 | E105 | SS-26 | 23 | 28.0 | 57 | T | 10 | HE | 1 | V | 73 | 1656 | Si | ||
179 | 55 | E106 | SS-33 | 23 | 28.0 | 51 | T | 10 | HE | 1 | V | 51 | 1425 | Tipico especiment estadio 23. final periodo embrionario | ||
182 | 56 | E107 | SS-31 | 23 | 29.0 | 57 | T | 10 | HE/TM | 1 | V | 68 | 1322 | #30 al 44 Tricromic de Masson | ||
185 | 57 | E108 | A-1 | 23 | 30.0 | 52 | T | 10 | B | 1 | V | 87 | 1764 | "Trencats: 749, 50, 79" | ||
189 | 58 | E109 | Bi-1 C Bis | 23 | 30.0 | 57 | T/S | 10 | HE/B | Body | 1 | V | 23 | 626 | "Porta 9 roto. HEAD: Sag./Biels. BODY: Transv /HE-VOF. En el documento pone 23 portas en caja hay 42. Por el 23 se refiere al BI-1 C" | |
192 | 59 | E110 | GF | 23 | 30.0 | 57 | T/F | 10 | HE/TM | Head | 1 | V | 100 | 1098 | Cabeza T. Cuerpo F | |
197 | 60 | E110 | GF | 23 | 30.0 | 57 | T/F | 10 | HE/TM | Body | 1 | V | 44 | 469 | Cuerpo F | |
199 | 61 | E111 | SAM | 23 | 30.0 | 57 | T | 10 | B | 1 | V | 94 | 1860 | Si | ||
205 | 62 | E112 | SS-14 | 23 | 31.0 | 53 | T | 10 | HE | 1 | N | 96 | 1425 | |||
207 | 63 | E113 | Do-004 A | 23 | 32.0 | 57 | T | 10 | HE/TA/TML/B | 1 | V | 101 | 2057 | Si | Tincion: cap B. cos HE/TA/VOF. Cuerpo: Ectopia cordis y del pulmon izq. | |
212 | 64 | E114 | Gi-05 | 23 | 32.0 | 54 | S | 10 | HE/TA/VOF | 1 | N | 35 | 355 | Si | Falta el 19. Tincions HE/TA |
Total Embryos = 114 Total Slides = 3810 Total Sections = 104072
DEC Links: D-M Collection Embryos | D-M Collection Embryos (English) | Domenech-Mateu Collection
Embryology Links: D-M Collection Embryos | English Table | Collection Domenech-Mateu Collection