UAB-DMC 2019 Slide Scanning - Revision history

MarkHill at 14:55, 17 September 2019

2019-09-17T14:55:05Z

← Older revision		Revision as of 00:55, 18 September 2019
Line 36:		Line 36:
	* Embryo E109 used as first test series.		* Embryo E109 used as first test series.

	~~==Embryo E109==~~

	~~Embryo E109 30 mm (Carnegie Stage {{CS23}})~~

	[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]		[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]

	{{Carnegie_stage_table_1}}		{{Carnegie_stage_table_1}}

	~~Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1~~


	~~Slide 1-42~~

	~~Additional slides~~

	~~Also a "B" series? slide 8 - 23 and 55?~~

2019-09-17T14:54:14Z

Introduction

← Older revision		Revision as of 00:54, 18 September 2019
Line 8:		Line 8:


	===Image Coding===		==Image Coding==

	Embryo image file example: UAB-E25-03-2		Embryo image file example: UAB-E25-03-2
Line 28:		Line 28:


			==Preparation Notes==
	Embryo E109 used as test series.		* Slides cleaned with microfibre cloth, excess mountain removed with blade.
			* Sticker added to label zone with embryo number and slide number.
			* Naming UAB-E109-slidenumber
			* Need to reset sequence of scan/numbering - bottomtopleftright (will this be different for different embryos?)
			* Course autofocus need to manually set (3300-3400) then save.
			* Embryo E109 used as first test series.

	==Embryo E109==		==Embryo E109==

2019-09-17T14:52:56Z

Notes

← Older revision		Revision as of 00:52, 18 September 2019
Line 47:		Line 47:

	Also a "B" series? slide 8 - 23 and 55?		Also a "B" series? slide 8 - 23 and 55?

	~~===Notes===~~
	* Slides cleaned with microfibre cloth, excess mountain removed with blade.
	* Sticker added to label zone with embryo number and slide number.
	* Naming UAB-E109-slidenumber
	* Need to reset sequence of scan/numbering - bottomtopleftright (will this be different for different embryos?)
	* Course autofocus not working correctly - need to manually set (3300-3400)
	* Slide 1 image 15,16 not sharp; slide 2 image 13 not sharp. When rescanned after fine focus on these section and wider course range OK.

2019-09-17T14:52:33Z

Introduction

← Older revision		Revision as of 00:52, 18 September 2019
Line 6:		Line 6:

	This page is designed to provide specific technical information for the slide scanner setup for collection scanning.		This page is designed to provide specific technical information for the slide scanner setup for collection scanning.


			===Image Coding===

			Embryo image file example: UAB-E25-03-2

			* '''UAB''' - identifies collection location
			* '''E25''' - identifies New Embryo Reference
			* '''03''' - identifies Slide number (note 3 digit coding could be used if more than 100 slides)
			* '''2''' - used only if the slide needs scanning to capture sections in label region (close to slide holder).

			Fetus image file example: UAB-F25-003-2

			* '''UAB''' - identifies collection location
			* '''F25''' - identifies New Fetus Reference
			* '''003''' - identifies Slide number (note 3 digit coding as these contain more than 100 slides)
			* '''2''' - used only if the slide needs scanning to capture sections in label region (close to slide holder).

			* Sections should be scanned in the correct serial sequence
			** This will be "upside down" compared to photocopied slide images.



	Embryo E109 used as test series.		Embryo E109 used as test series.

2019-09-12T14:21:00Z

← Older revision		Revision as of 00:21, 13 September 2019
Line 1:		Line 1:
	=Domenech-Mateu Collection Slide Scanning=		=Domenech-Mateu Collection Slide Scanning=
			[[Domenech-Mateu Collection]]
	==Introduction==		==Introduction==
	[[File:Domenech-Mateu Collection-Scanner2019-01.jpg\|thumb\|alt=Domenech-Mateu Collection-Scanner2019\|Slide Scanner 2019]]		[[File:Domenech-Mateu Collection-Scanner2019-01.jpg\|thumb\|alt=Domenech-Mateu Collection-Scanner2019\|Slide Scanner 2019]]

2019-09-12T13:42:50Z

Notes

← Older revision		Revision as of 23:42, 12 September 2019
Line 26:		Line 26:

	===Notes===		===Notes===
			* Slides cleaned with microfibre cloth, excess mountain removed with blade.
			* Sticker added to label zone with embryo number and slide number.
	* Naming UAB-E109-slidenumber		* Naming UAB-E109-slidenumber
	* Need to reset sequence of scan/numbering - bottomtopleftright (will this be different for different embryos?)		* Need to reset sequence of scan/numbering - bottomtopleftright (will this be different for different embryos?)
	* Course autofocus not working correctly - need to manually set (3300-3400)		* Course autofocus not working correctly - need to manually set (3300-3400)
	* Slide 1 image 15,16 not sharp; slide 2 image 13 not sharp. When rescanned after fine focus on these section and wider course range OK.		* Slide 1 image 15,16 not sharp; slide 2 image 13 not sharp. When rescanned after fine focus on these section and wider course range OK.

2019-09-12T13:41:14Z

Embryo E109

← Older revision		Revision as of 23:41, 12 September 2019
Line 14:		Line 14:
	[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]		[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]

			{{Carnegie_stage_table_1}}

	Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1		Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1
Line 24:		Line 25:
	Also a "B" series? slide 8 - 23 and 55?		Also a "B" series? slide 8 - 23 and 55?

			===Notes===
	~~{{Carnegie_stage_table_1}}~~		* Naming UAB-E109-slidenumber
			* Need to reset sequence of scan/numbering - bottomtopleftright (will this be different for different embryos?)
			* Course autofocus not working correctly - need to manually set (3300-3400)
			* Slide 1 image 15,16 not sharp; slide 2 image 13 not sharp. When rescanned after fine focus on these section and wider course range OK.

2019-09-12T13:37:02Z

Introduction

← Older revision		Revision as of 23:37, 12 September 2019
Line 6:		Line 6:
	This page is designed to provide specific technical information for the slide scanner setup for collection scanning.		This page is designed to provide specific technical information for the slide scanner setup for collection scanning.

			Embryo E109 used as test series.

	==Embryo E109==		==Embryo E109==

2019-09-12T13:36:13Z

Embryo E109

← Older revision		Revision as of 23:36, 12 September 2019
Line 15:		Line 15:

	Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1		Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1


			Slide 1-42

			Additional slides

			Also a "B" series? slide 8 - 23 and 55?


	{{Carnegie_stage_table_1}}		{{Carnegie_stage_table_1}}

2019-09-12T13:12:45Z

← Older revision		Revision as of 23:12, 12 September 2019
Line 13:		Line 13:
	[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]		[[File:Domenech-Mateu Collection-Scanner2019-02.jpg\|600px]]


			Stage 23 Human Embryo (E109) 30 mm Abdomen (slide 1-17), thorax (slide 17-23), Original name - Bi-1


	{{Carnegie_stage_table_1}}		{{Carnegie_stage_table_1}}